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added Co Author

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This commit is contained in:
Bartha Maxime
2024-04-20 19:07:27 +02:00
parent 041fe7f95d
commit 54d19eb888
14 changed files with 186 additions and 251 deletions
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2
backend/build.gradle.kts
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@ -27,7 +27,7 @@ dependencies {
implementation("com.kohlschutter.junixsocket:junixsocket-core:2.9.0")
// implementation("org.springframework.session:spring-session-jdbc")
developmentOnly("org.springframework.boot:spring-boot-devtools")
// developmentOnly("org.springframework.boot:spring-boot-docker-compose")
developmentOnly("org.springframework.boot:spring-boot-docker-compose")
runtimeOnly("org.postgresql:postgresql")
testImplementation("org.springframework.boot:spring-boot-starter-test")
testImplementation("org.springframework.boot:spring-boot-testcontainers")

12
backend/src/main/java/ovh/herisson/Clyde/DTO/ScientificPublications/ResearchDTO.java
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@ -12,8 +12,11 @@ import lombok.Data;
import ovh.herisson.Clyde.Tables.ScientificPublications.Access;
import ovh.herisson.Clyde.Tables.ScientificPublications.PaperType;
import ovh.herisson.Clyde.Tables.ScientificPublications.Research;
import ovh.herisson.Clyde.Tables.ScientificPublications.Researcher;
import java.util.Date;
import java.util.HashSet;
import java.util.Set;
@Data
public class ResearchDTO {
@ -21,6 +24,7 @@ public class ResearchDTO {
private long id;
private String title;
private ResearcherDTO researcher;
private final Set<ResearcherDTO> coAuthors;
private Date releaseDate;
private PaperType paperType;
private String pdfLocation;
@ -31,7 +35,7 @@ public class ResearchDTO {
private String summary;
private long views;
private ResearchDTO(String title, ResearcherDTO researcherDTO, Date releaseDate, PaperType paperType, String pdfLocation, String language, Access access, String domain,String bibTexLocation, String summary, long id,long views) {
private ResearchDTO(String title, ResearcherDTO researcherDTO, Date releaseDate, PaperType paperType, String pdfLocation, String language, Access access, String domain, String bibTexLocation, String summary, Set<Researcher> coAuthors, long id, long views) {
this.title = title;
this.researcher = researcherDTO;
this.releaseDate = releaseDate;
@ -43,6 +47,10 @@ public class ResearchDTO {
this.summary = summary;
this.id = id;
this.bibTexLocation = bibTexLocation;
this.coAuthors = new HashSet<>();
for (Researcher coAuthor: coAuthors) {
this.coAuthors.add(ResearcherDTO.construct(coAuthor));
}
this.views = views;
}
@ -50,6 +58,6 @@ public class ResearchDTO {
public static ResearchDTO construct(Research research){
return new ResearchDTO(research.getTitle(), ResearcherDTO.construct(research.getAuthor()), research.getReleaseDate(),
research.getPaperType(),research.getPdfLocation(),research.getLanguage(),research.getAccess(),
research.getDomain(),research.getBibTexLocation(), research.getSummary(), research.getId(), research.getViews());
research.getDomain(),research.getBibTexLocation(), research.getSummary(), research.getCoAuthors(),research.getId(), research.getViews());
}
}

19
backend/src/main/java/ovh/herisson/Clyde/EndPoints/MockController.java
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@ -19,9 +19,7 @@ import ovh.herisson.Clyde.Tables.Inscription.InscriptionRequest;
import ovh.herisson.Clyde.Tables.Inscription.Minerval;
import ovh.herisson.Clyde.Tables.Inscription.ScholarshipRequest;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Date;
import java.util.*;
@RestController
@CrossOrigin(originPatterns = "*", allowCredentials = "true")
@ -138,24 +136,29 @@ public class MockController {
// extension Publications Scientifiques
Researcher jojoResearcherAccount = new Researcher(jojo, "3363-22555-AB33-T", null, "IT");
Researcher joResearchAccount = new Researcher(joe,"N555-321213-BED-DD",null, "Physics");
Researcher output = researchesService.saveResearcher(jojoResearcherAccount);
Researcher joOutput = researchesService.saveResearcher(joResearchAccount);
Set<Researcher> coAuthor = new HashSet<>();
coAuthor.add(joOutput);
Research jojoResearch = new Research("Graphs : Advanced Search Algorithms", output, new Date(0),
PaperType.Article, "test.pdf", null, "english",
Access.OpenSource, "IT", "This Article's title speaks for itself \n We'll discuss about advanced Graph search Algorithms");
Access.OpenSource, "IT", "This Article's title speaks for itself \n We'll discuss about advanced Graph search Algorithms",coAuthor);
Research restrictedResearch = new Research("just another Name", output, new Date(1111111111),
PaperType.Article, "restricted", null, "english",
Access.Restricted, "Restricted", "This Article's title speaks for itself\n We'll discuss about advanced Graph search Algorithms");
Access.Restricted, "Restricted", "This Article's title speaks for itself\n We'll discuss about advanced Graph search Algorithms", new HashSet<>());
Research privateResearch = new Research("the great Potato War", output, new Date(),
PaperType.Article, "private", null, "english",
Access.Private, "private", "This Article's title speaks for itself\n We'll discuss about advanced Graph search Algorithms");
Access.Private, "private", "This Article's title speaks for itself\n We'll discuss about advanced Graph search Algorithms",null);
researchesService.saveResearch(restrictedResearch);
researchesService.saveResearch(privateResearch);
researchesService.saveResearch(jojoResearch);
}

76
backend/src/main/java/ovh/herisson/Clyde/EndPoints/ScientificPublications/ResearchController.java
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@ -108,6 +108,7 @@ public class ResearchController {
}
/** post updates to the research
* in the updates, the coAuthors have to be referenced by their ids
*
*/
@PatchMapping("/research/{id}")
@ -152,81 +153,6 @@ public class ResearchController {
return new ResponseEntity<>(HttpStatus.OK);
}
/////////////
// Co-authors Part
/** get all the co-authors in a research
*
* @param id the research id
* @return all the co-authors associated with the research
*/
@GetMapping("/research/{id}/co-authors")
public ResponseEntity<Iterable<ResearcherDTO>> getCoAuthors(@PathVariable long id){
Research research = researchesServ.getResearchById(id);
if (research == null) return new ResponseEntity<>(HttpStatus.NOT_FOUND);
Iterable<Researcher> researchers= researchesServ.getCoAuthors(research);
ArrayList<ResearcherDTO> toReturn = new ArrayList<>();
for (Researcher researcher: researchers){
toReturn.add(ResearcherDTO.construct(researcher));
}
return new ResponseEntity<>(toReturn,HttpStatus.OK);
}
/** post co-authors to the research
*
* @param token the Authorization header
* @param researchersId the co-authors ids
* @param id the research id
* @return the added researchers
*/
@PostMapping("/research/{id}/co-authors")
public ResponseEntity<Iterable<ResearcherDTO>> postCoAuthor(@RequestHeader("Authorization") String token,
@RequestBody Iterable<Long> researchersId,
@PathVariable long id)
{
Research research = researchesServ.getResearchById(id);
if (research == null) return new ResponseEntity<>(HttpStatus.NOT_FOUND);
if (authServ.isNotIn(new Role[]{Role.Admin}, token) || research.getAuthor() != researchesServ.getResearcherByUser(authServ.getUserFromToken(token)))
return new UnauthorizedResponse<>(null);
if (!researchesServ.saveCoAuthors(researchersId,research))
return new ResponseEntity<>(HttpStatus.BAD_REQUEST);
ArrayList<ResearcherDTO> toReturn = new ArrayList<>();
for (Long reId: researchersId){
toReturn.add(ResearcherDTO.construct(researchesServ.getResearcherById(reId)));
}
return new ResponseEntity<>(toReturn,HttpStatus.OK);
}
/** deletes the co-author with *coAuthorId* from the research with the *researchId*
*/
@DeleteMapping("/research/{researchId}/co-author/{coAuthorId}")
public ResponseEntity<String> deleteCoAuthor(@RequestHeader("Authorization") String token,
@PathVariable long researchId,
@PathVariable long coAuthorId)
{
Research research = researchesServ.getResearchById(researchId);
Researcher coAuthor = researchesServ.getResearcherById(coAuthorId);
if (authServ.isNotIn(new Role[]{Role.Admin}, token) || research.getAuthor() != researchesServ.getResearcherByUser(authServ.getUserFromToken(token)))
return new UnauthorizedResponse<>(null);
if (coAuthor == null) return new ResponseEntity<>(HttpStatus.NOT_FOUND);
if (!researchesServ.deleteCoAuthor(research, coAuthor))
return new ResponseEntity<>(HttpStatus.BAD_REQUEST);
return new ResponseEntity<>(HttpStatus.OK);
}
///////
//views part
@PostMapping("/addview/cdn/{url}")

18
backend/src/main/java/ovh/herisson/Clyde/Repositories/ScientificPublications/ResearchCoAuthorsRepository.java
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@ -1,18 +0,0 @@
package ovh.herisson.Clyde.Repositories.ScientificPublications;
import org.springframework.data.jpa.repository.Query;
import org.springframework.data.repository.CrudRepository;
import ovh.herisson.Clyde.Tables.Course;
import ovh.herisson.Clyde.Tables.Curriculum;
import ovh.herisson.Clyde.Tables.ScientificPublications.Research;
import ovh.herisson.Clyde.Tables.ScientificPublications.ResearchCoAuthors;
import ovh.herisson.Clyde.Tables.ScientificPublications.Researcher;
public interface ResearchCoAuthorsRepository extends CrudRepository<ResearchCoAuthors,Long> {
@Query("select distinct rca.coAuthor from ResearchCoAuthors rca where rca.research = ?1")
Iterable<Researcher> findResearchCoAuthors(Research research);
@Query("select rca from ResearchCoAuthors rca where rca.research = ?1 and rca.coAuthor =?2")
ResearchCoAuthors findResearchCoAuthors(Research research, Researcher researcher);
}

165
backend/src/main/java/ovh/herisson/Clyde/Services/ScientificPublications/ResearchesService.java
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@ -2,47 +2,33 @@ package ovh.herisson.Clyde.Services.ScientificPublications;
import lombok.AllArgsConstructor;
import org.springframework.stereotype.Service;
import ovh.herisson.Clyde.DTO.ScientificPublications.ResearchDTO;
import ovh.herisson.Clyde.Repositories.ScientificPublications.ResearchCoAuthorsRepository;
import ovh.herisson.Clyde.Repositories.ScientificPublications.ResearchRepository;
import ovh.herisson.Clyde.Repositories.ScientificPublications.ResearcherRepository;
import ovh.herisson.Clyde.Tables.Role;
import ovh.herisson.Clyde.Tables.ScientificPublications.*;
import ovh.herisson.Clyde.Tables.User;
import java.util.ArrayList;
import java.util.Date;
import java.util.Map;
import java.util.*;
@Service
@AllArgsConstructor
@SuppressWarnings("unchecked")
public class ResearchesService {
private final ResearcherRepository researcherRepo;
private final ResearchCoAuthorsRepository researchCoAuthorsRepo;
private final ResearchRepository articleRepo;
// Researchers Part
public Researcher getResearcherByUser(User user){
return researcherRepo.findByUser(user);
}
public boolean isCoAuthor(Research research, Researcher researcher){
Iterable<Researcher> coAuthors = researchCoAuthorsRepo.findResearchCoAuthors(research);
for (Researcher coAuthor : coAuthors){
if (researcher == coAuthor){
return true;
}
}
return false;
}
// researches Part
public Research getResearchById(long id) {
return articleRepo.findById(id);
}
public Research getResearchByUrl(String url) {
return articleRepo.findByPdfLocation(url);
}
public Iterable<Research> getResearchesByAuthor(long authorId){
Researcher researcher = researcherRepo.findById(authorId);
if (researcher == null) return null;
@ -50,29 +36,6 @@ public class ResearchesService {
return researcherRepo.findAllByAuthorId(researcher);
}
public boolean hasNoAccessTo(Research research, User user){
if (research.getAccess() == Access.OpenSource) return false; // if the access is open source even non-users can see it
if (user == null) return true; // else you need at least to be a user
if (user.getRole() == Role.Admin) return false;
if (research.getAccess() == Access.Restricted &&
user.getRole() == Role.Secretary ||
user.getRole() == Role.Teacher || user.getRole() == Role.InscriptionService)
return false; // if the access is restricted only the staff member (above) can access the research
Researcher researcher = getResearcherByUser(user);
if (researcher==null)
return true;
return (research.getAccess() != Access.Private || research.getAuthor() != researcher) &&
(research.getAccess() != Access.Private || !isCoAuthor(research, researcher));
// if the researcher is the author or one of the co-authors of the research will return false
}
public Research saveResearch(Research research) {
return articleRepo.save(research);
}
@ -98,6 +61,18 @@ public class ResearchesService {
case "access":
research.setAccess(Access.valueOf((String) entry.getValue()));
break;
case "coAuthors":
Set<Researcher> set = new HashSet<>();
for (int id : (List<Integer>) entry.getValue()) {
Researcher r = researcherRepo.findById(id);
if (r != null){
set.add(r);
}
}
research.setCoAuthors(set);
break;
}
}
articleRepo.save(research);
@ -107,6 +82,12 @@ public class ResearchesService {
articleRepo.delete(research);
}
// Researchers Part
public Researcher getResearcherByUser(User user){
return researcherRepo.findByUser(user);
}
public Iterable<Research> getAllResearches() {
return articleRepo.findAll();
}
@ -129,41 +110,6 @@ public class ResearchesService {
researcherRepo.delete(researcher);
}
public boolean saveCoAuthors(Iterable<Long> researchersId, Research research) {
if (researchersId == null) return false;
ArrayList<Researcher> toAdd = new ArrayList<>();
for (long researcherId : researchersId){
Researcher researcher= researcherRepo.findById(researcherId);
if (research== null){
return false;
}
if (!toAdd.contains(researcher))
{
toAdd.add(researcher);
}
}
for (Researcher researcher: toAdd){
researchCoAuthorsRepo.save(new ResearchCoAuthors(researcher,research));
}
return true;
}
public Iterable<Researcher> getCoAuthors(Research research) {
return researchCoAuthorsRepo.findResearchCoAuthors(research);
}
public boolean deleteCoAuthor(Research research,Researcher coAuthor) {
ResearchCoAuthors result = researchCoAuthorsRepo.findResearchCoAuthors(research,coAuthor);
if (result ==null)
return false;
researchCoAuthorsRepo.delete(result);
return true;
}
public void modifyResearcherData(Researcher researcher, Map<String, Object> updates) {
for (Map.Entry<String, Object> entry : updates.entrySet()){
@ -185,12 +131,69 @@ public class ResearchesService {
researcherRepo.save(researcher);
}
public Research getResearchByUrl(String url) {
return articleRepo.findByPdfLocation(url);
//Co Author part
public boolean saveCoAuthors(Iterable<Long> researchersId, Research research) {
if (researchersId == null) return false;
ArrayList<Researcher> toAdd = new ArrayList<>();
for (long researcherId : researchersId){
Researcher researcher= researcherRepo.findById(researcherId);
if (researcher== null){
return false;
}
if (!toAdd.contains(researcher))
{
toAdd.add(researcher);
}
}
research.getCoAuthors().addAll(toAdd);
articleRepo.save(research);
return true;
}
public boolean deleteCoAuthor(Research research,Researcher coAuthor) {
if (!research.getCoAuthors().contains(coAuthor))
return false;
research.getCoAuthors().remove(coAuthor);
articleRepo.save(research);
return true;
}
// Other stuff
public Research addView(Research research) {
research.setViews(research.getViews()+1);
return articleRepo.save(research);
}
public boolean hasNoAccessTo(Research research, User user){
if (research.getAccess() == Access.OpenSource) return false; // if the access is open source even non-users can see it
if (user == null) return true; // else you need at least to be a user
if (user.getRole() == Role.Admin) return false;
Researcher researcher = getResearcherByUser(user);
if (researcher !=null ){
if (research.getAuthor().getId() == researcher.getId())
return false;
for (Researcher coAuthor: research.getCoAuthors()){
if (coAuthor.getId() == researcher.getId())
return false;
}
}
if (research.getAccess() == Access.Restricted && (
user.getRole() == Role.Secretary ||
user.getRole() == Role.Teacher || user.getRole() == Role.InscriptionService))
return false; // if the access is restricted only the staff member (above) can access the research
return true;
// if the researcher is the author or one of the co-authors of the research will return false
}
}

14
backend/src/main/java/ovh/herisson/Clyde/Tables/ScientificPublications/Research.java
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@ -16,10 +16,14 @@ import org.hibernate.annotations.CreationTimestamp;
import org.hibernate.annotations.OnDelete;
import org.hibernate.annotations.OnDeleteAction;
import java.util.Date;
import java.util.List;
import java.util.Set;
@Getter
@Setter
@NoArgsConstructor
@Entity
@Table(name = "Research")
public class Research {
@Id
@GeneratedValue(strategy = GenerationType.AUTO)
@ -51,8 +55,15 @@ public class Research {
private int views;
@ManyToMany(cascade = {CascadeType.MERGE})
@JoinTable(name = "ResearchCoAuhors",
joinColumns = @JoinColumn(name = "research_id"),
inverseJoinColumns = @JoinColumn(name = "researcher_id")
)
private Set<Researcher> coAuthors;
public Research(String title, Researcher author, Date releaseDate, PaperType paperType,
String pdfLocation, String bibTexLocation, String language, Access access, String domain, String summary){
String pdfLocation, String bibTexLocation, String language, Access access, String domain, String summary,Set<Researcher> coauthors){
this.author = author;
this.title = title;
this.releaseDate = releaseDate;
@ -63,6 +74,7 @@ public class Research {
this.access = access;
this.domain = domain;
this.summary = summary;
this.coAuthors = coauthors;
}
}

42
backend/src/main/java/ovh/herisson/Clyde/Tables/ScientificPublications/ResearchCoAuthors.java
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@ -1,42 +0,0 @@
package ovh.herisson.Clyde.Tables.ScientificPublications;
/******************************************************
* @file ResearchCoAuthors
* @author Maxime Bartha
* @scope Extension Publications scientifiques
*
* Co-Authors List entity (will be accessed by Articles)
*
******************************************************/
import jakarta.persistence.*;
import lombok.AllArgsConstructor;
import lombok.Getter;
import lombok.NoArgsConstructor;
import lombok.Setter;
import org.hibernate.annotations.OnDelete;
import org.hibernate.annotations.OnDeleteAction;
@Getter
@Setter
@NoArgsConstructor
@Entity
public class ResearchCoAuthors {
@Id
@GeneratedValue(strategy = GenerationType.AUTO)
Long id;
@ManyToOne(fetch = FetchType.EAGER)
@JoinColumn(name = "Researcher")
private Researcher coAuthor;
@ManyToOne(fetch = FetchType.EAGER)
@OnDelete(action = OnDeleteAction.CASCADE)
@JoinColumn(name = "Article")
private Research research;
public ResearchCoAuthors(Researcher coAuthor, Research research){
this.coAuthor = coAuthor;
this.research = research;
}
}

1
backend/src/main/java/ovh/herisson/Clyde/Tables/ScientificPublications/Researcher.java
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@ -20,6 +20,7 @@ import ovh.herisson.Clyde.Tables.User;
@Setter
@NoArgsConstructor
@Entity
@Table(name = "Researcher")
public class Researcher {
@Id
@GeneratedValue(strategy = GenerationType.AUTO)